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A Multi-omic Atlas of Human Embryonic Skeletal Development
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SWHID:swh:1:dir:38676d9d74c442631f540144b31b1fe11d322964
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A Nextflow pipeline for analysing scMTR-seq data (a single cell multiomics method)
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DOI:10.5281/zenodo.15046901
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Chromatin and histone proteomics of human pluripotent states
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DOI:10.5281/ZENODO.6400749
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Code for reproducing the analysis / figures in the manuscript: Combinatorial profiling of multiple histone modifications and transcriptome in single cells using scMTR-seq
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DOI:10.5281/zenodo.15046989
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Code repository for: Single cell transcriptome profiling of the human developing spinal cord reveals a conserved genetic programme with human specific features
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SWHID:swh:1:dir:e894645fbb552ff32af19dff5f4395f99f381f2b
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Compute nuclear chromatin distribution in zygotes
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SWHID:swh:1:dir:99b72c30ebb767297a70fa7296e748f77ed7232f
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FCA Human Yolksac study
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SWHID:swh:1:dir:1c585acedaa8855cc6a7d0f5ba535667e71c9df4
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FCA bone marrow study
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SWHID:swh:1:dir:daa0730c1d55df10d4d3d4685a036f6f0db3d4c3
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Hierarchical lineage architecture of human and avian spinal cord revealed by single-cell genomic barcoding
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SWHID:swh:1:dir:1ef35bbbe8c72eb4326d099d6745793dd140bb0b
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Human Thymus Spatial Atlas
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SWHID:swh:1:dir:344d7823ce84dcd2bb0cc24710662d767e801583
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Human gastrula single-cell data shiny app code and data.
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SWHID:swh:1:dir:bf91de9471e0fb7d0d7c9b0de6e235a405d9718e
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ISS (in situ sequencing) Patcher
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SWHID:swh:1:dir:06e3053b14fc3ac1da2e3b4340e6a6c5bf371be1
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LARRY clonal composition pipeline
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SWHID:swh:1:dir:b7bd64d8476924cc1e385d7968e2e55a232657e1
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MICA analysis scripts
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SWHID:swh:1:dir:575722a121580be06f4e298e6082807a156e96bb
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Mapping the developing human immune system across organs
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DOI:10.5281/zenodo.6481461
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Neupane et al. Hematoids
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SWHID:swh:1:dir:23e10a60da6a5f9e84417e64204716bc6fb962b1
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Nuclear & Organoid Segmentation, volume & fluorescence intensity quantification scripts
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DOI:10.5281/zenodo.14627141
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Python notebooks for A tridimensional atlas of the developing human head.
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SWHID:swh:1:dir:8d5f1e4bc519343c4e60c08c9841ca3186991406
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Replication driven switch aux code
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SWHID:swh:1:dir:1c715cf713477c44d758d80e1980c550302aa6ba
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Rugg-Gunn-Lab/CREST: Publication release v1.0
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DOI:10.5281/zenodo.17955321
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Scripts required for processing and visualisation of calibrated Cut&Run data as published in Zijlmans et al., 2022.
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DOI:10.5281/ZENODO.6399297
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Segmentation and image analysis pipeline for the investigation of lineage marker expression in early human development
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DOI:10.25418/crick.19383428.v1
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Suppression of ERK signalling promotes pluripotent epiblast in the human blastocyst
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SWHID:swh:1:dir:f193b7d168bf727dee933ac636887eed2a6b6644
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TissueTag: Jupyter Image Annotator
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SWHID:swh:1:dir:3f0e4eed83a1fc303963218b5dc3d407c7ec8f7e
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nf-fgwas
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SWHID:swh:1:dir:521f5ebc748f098312488a3cff71a7a9124bda50
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pasquelab/PRC2: Integrated Multi-Omics Reveal Polycomb Repressive Complex 2 Restricts Human Trophoblast Induction
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DOI:10.5281/ZENODO.6398543
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snp2cell
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SWHID:swh:1:dir:171dbb741f1941beeeeb00e00b8d6e797ee60a8b
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