Hierarchical lineage architecture of human and avian spinal cord revealed by single-cell genomic barcoding

Authors

Affiliation

Giulia Boezio

The Francis Crick Institute

Jasper R. L Depotter

The Francis Crick Institute

James Briscoe

The Francis Crick Institute

Abstract

This repository contains the code, data references, and notebooks used in the analyses for the paper: Hierarchical lineage architecture of human and avian spinal cord revealed by single-cell genomic barcoding
The repository includes: - Python notebooks, Python scripts, and R Markdown files for data processing and figure generation - Links to data hosted on GEO (GSE312424) - A reproducible environment for Python code The repository does not include: - Raw FASTQ files and preprocessed Seurat/h5ad objects (available to download from GSE312424) - LARRY clone output (generated by the nf-LARRY pipeline: https://github.com/FrancisCrickInstitute/LARRY; available to download from GSE312424)

Files

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SWHID:swh:1:dir:1ef35bbbe8c72eb4326d099d6745793dd140bb0b

Papers

Hierarchical lineage architecture of human and avian spinal cord revealed by single-cell genomic barcoding
DOI:10.1101/2025.10.24.684328